R: Summarize per-exon p-values into per-gene q-values.

perGeneQValue {DEXSeq}

R Documentation

Summarize per-exon p-values into per-gene q-values.

Description

The use case for this function is the following analysis: given per-exon p-values for null hypothesis H0, we can determine the number of genes in which at least for one exon H0 is rejected. What is the associated false disovery rate?

Usage

perGeneQValue(ecs, p = "pvalue", method = perGeneQValueExact)

Arguments

`ecs`	An `ExonCountSet` object. `fData(ecs)` is required to have columns `testable` and `geneID`.
`p`	A character string indicating the name of the slot in `fData(ecs)` from which to take the per-exon p-values.
`method`	Use the default value. This is for debugging only.

Details

Value

A named numeric vector, values are per-gene q-values, names are gene.

Examples

 ## example code

[Package DEXSeq version 1.8.0 Index]